| Protein ZmLIM8 | |
|---|---|
|
ZmLIM8 is a protein in the LIM family.
|
|
| Information | |
| TF Name: | ZmLIM8 |
| Species: | Maize |
| TF Family: | LIM |
| Gene Name(Synonym): | LIMTF8 |
| Uniprot ID: | C0P2G9 |
| Subgenome: | 2 |
Protein ZmLIM8
ZmLIM8 is a protein in the LIM family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00412 | |
| Zm00001eb185900_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d051262 | DAPseq |  |
sequence | fimo | position |
| Zm00001d051262 | DAPseq |  |
sequence | fimo | position |
| Zm00001d051262 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d051262 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmLIM8 is the regulator
Interactions where ZmLIM8 is the target
Expand
Zm00001eb185900_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00412 |
|
| PF00412 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
CTTCTTCCTTCCGGCCGAATTGCGA...
CTTCTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGGTGGAGCATCTTCAAACAAGAACGACCCGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTCTGCATTCAGTAAGTAGTTTTCACAAATCTATATATGTTGTTGTTATGCTGCAGCTTGGTTTTGGTCAGTCTGGGATTGTAACACGTGTATGTTGAATTGCTTGAATTGCTTATTCTGTACACTACAAGAAACTGATAAATGTTCGTGAGTAAAAGTAAGAACGTGGGTACCGACGTTCTTACTTGAGTT
GRMZM2G134752_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
Nucleotide Sequence
Copy to clipboard
Expand
CTTCCTTCCGGCCGAATTGCGAGCG...
CTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGGTGGAGCATCTTCAAACAAGAACGACCCGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTCTGCATTCAGTAAGTAGTTTTCACAAATCTATATATGTTGTTGTTATGCTGCAGCTTGGTTTTGGTCAGTCTGGGATTGTA
GRMZM2G134752_T02 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPVLRFLRSSKQIIQI
Nucleotide Sequence
Copy to clipboard
Expand
CTTCCTTCCGGCCGAATTGCGAGCG...
CTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGGTGGAGCATCTTCAAACAAGAACGACCCGGTACTACGGTTCCTCAGATCCTCTAAACAAATTATTCAAATCTGACAAGTTATAAAAACTTTATTGGTCATGTCATCATATGTAATGTACTACGTGGTTGACTCCTTGTACACACGACGCCAATTCGAAAATCTCTGCAGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTC
Zm00001d051262_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGG
GASSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFS
QLFKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
Nucleotide Sequence
Copy to clipboard
Expand
CCGGCCGGACACGGGAGGGCGTCGC...
CCGGCCGGACACGGGAGGGCGTCGCCACCGCTCCCCGATCGAAGCTAAAAAAAACTTTGCCCGAATTTGTCTGTACGGTTTAGAGCCTTCGCGCCTCCTATCTTTGCTCCCGAGCTCACGCCCTGTCCTTTAAAGAGCACCCGTCTCTCTCCCGAGACGTCAACCTTTGCTTCTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGGTGGAGCATCTTCAAACAAGAACGACCCGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTCTGCATTCAGTAAGTAGTTTTCACAAATCTATATATGTTGTTGTTATGCTGCAGCTTGGTTTTGGTCAGTCTGGGATTGTAACACGTGTATGTTGAATTGCTTGAATTGCTTATTCTGTACACTACAAGAAACTGATAAATGTTCGTGAGTAAAAGTAAGAACGTGGGTACCGACGTTCTTACTTGAG
Zm00001d051262_T002 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MRRG
Nucleotide Sequence
Copy to clipboard
Expand
AACCTTTGCTTCTTCCTTCCGGCCG...
AACCTTTGCTTCTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTCTGCATTCAGTAAGTAGTTTTCACAAATCTATATATGTTGTTGTTATGCTGCAGCTTGGTTTTGGTCAGTCTGGGATTGTAACACGTGTATGTTGAATTGCTTGAATTGCTTATTCTGTACACTACAAGAAACTGATAAATGTTCGTGAGT
Zm00001d051262_T003 from maize genome v4
Amino Acid Sequence
Copy to clipboard
TFASSFRPNCERAFLSVRFRRLPVDQLLAAGRVLPPARAAASHSPQTDDVRSWQVCKQTELARSPCLSPARRTSAKPATR
RSTSSTCSPPTASRTTRPASNAATARASSRLAATLPWTAFCTARRTLNSSSRRRGTSPRNSKVEVEHLQTRTTRYYGSSD
PLNKLFKSDKL
Nucleotide Sequence
Copy to clipboard
Expand
AACCTTTGCTTCTTCCTTCCGGCCG...
AACCTTTGCTTCTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGGTGGAGCATCTTCAAACAAGAACGACCCGGTACTACGGTTCCTCAGATCCTCTAAACAAATTATTCAAATCTGACAAGTTATAAAAACTTTATTGGTCATGTCATCATATGTAATGTACTACGTGGTTGACTCCTTGTACACACGACGCCAATTCGAAAATCTCTGCAGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCGTGTGTGTATCTCCTAATTATACGAACTCTGCATTCAGTAAGTAGTTTTCACAAATCTATATATGTTGTTGTTATGC
Zm00001d051262_T004 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGVLSISSYSSMDGVLYCKTHFEQLFKETGNFSKKFQGGA
SSNKNDPAKAPSKLSSAFSGTQDKCAACQKTVYPLEKMTLEGESYHKGCFKCSHGGCILTTSSYAALNGILYCKIHFSQL
FKEKGSYNHLIETAQTKKNEAAEAAEEPSVDACAAAEAEASAESA
Nucleotide Sequence
Copy to clipboard
Expand
CCGGCCGGACACGGGAGGGCGTCGC...
CCGGCCGGACACGGGAGGGCGTCGCCACCGCTCCCCGATCGAAGCTAAAAAAAACTTTGCCCGAATTTGTCTGTACGGTTTAGAGCCTTCGCGCCTCCTATCTTTGCTCCCGAGCTCACGCCCTGTCCTTTAAAGAGCACCCGTCTCTCTCCCGAGACGTCAACCTTTGCTTCTTCCTTCCGGCCGAATTGCGAGCGAGCGTTCCTCTCCGTCCGCTTCCGCCGTTTGCCCGTCGATCAGTTGTTGGCTGCCGGCCGGGTACTACCGCCTGCACGAGCAGCGGCTAGCCACAGCCCACAGACAGACGACGTCAGGTCTTGGCAGGTGTGCAAGCAGACAGAGCTCGCTCGGTCGCCATGTCTTTCACCGGCACGCAGGACAAGTGCAAAGCCTGCGACAAGACGGTCCACTTCATCGACCTGCTCACCGCCGACGGCGTCTCGTACCACAAGACCTGCTTCAAATGCAGCCACTGCAAGGGCGTCCTCTCGATTAGCAGCTACTCTTCCATGGACGGCGTTCTGTACTGCAAGACGCACTTTGAACAGCTCTTCAAGGAGACGGGGAACTTCTCCAAGAAATTCCAAGGTGGAGCATCTTCAAACAAGAACGACCCGGCAAAGGCTCCGAGCAAGCTGTCATCTGCATTCTCTGGAACTCAAGACAAATGCGCAGCCTGCCAGAAGACCGTGTATCCATTGGAGAAGATGACGCTGGAAGGCGAGTCGTACCACAAGGGCTGCTTCAAGTGCTCGCACGGCGGCTGCATCCTGACCACCTCCTCCTACGCCGCGCTCAACGGGATCCTCTACTGCAAGATCCATTTCTCGCAGCTGTTCAAGGAGAAGGGCAGCTACAACCACCTCATCGAGACGGCGCAGACCAAGAAGAACGAGGCCGCGGAGGCCGCAGAGGAGCCATCGGTGGACGCATGCGCCGCGGCTGAGGCGGAAGCGTCCGCGGAATCGGCGTAGAACGAAGAGTAGCCG
Copyright © 2023 Grassius.org | Last updated: 2023-06-26